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Python/R for Bioinformatics: Genomics, Transcriptomics & Proteomics Data

Python/R for Bioinformatics: Genomics, Transcriptomics & Proteomics Data

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06
Days
:
22
Hrs
:
42
Min
:
23
Sec

Course Overview


02/07/2026

Registration closes 02/07/2026
Mentor Based

Program Syllabus

Module 1

About This Course

High-throughput technologies like next-generation sequencing and mass spectrometry generate massive volumes of omics data. To turn this raw information into meaningful biological insights, researchers must be comfortable with scripting, data wrangling, and analysis workflows in Python and R. This workshop bridges that gap by focusing on practical, example-driven bioinformatics using real or realistic datasets.

Participants will learn how to import, clean, explore, and analyze genomics, transcriptomics, and proteomics data using widely adopted libraries and packages. Topics include sequence data handling, basic alignment/annotation outputs, gene expression analysis, simple differential expression pipelines, and basic visualization (heatmaps, PCA, volcano plots). The emphasis is on hands-on coding, reproducible workflows, and interpreting results in a biological context.

Module 2

Aim

This workshop aims to train participants in using Python and R for practical bioinformatics analysis across genomics, transcriptomics, and proteomics datasets. It focuses on data handling, preprocessing, visualization, and basic statistical and machine-learning workflows for high-throughput omics data. Through hands-on sessions, participants will learn how to work with FASTA/FASTQ, count matrices, differential expression data, and proteomics tables. The goal is to build confidence in using open-source tools and scripting to solve real biological questions.

Module 3

Workshop Objectives

  • Use Python and R to import, clean, and explore genomics, transcriptomics, and proteomics datasets.
  • Work with common bioinformatics file formats (FASTA, FASTQ, VCF, count matrices, expression tables).
  • Perform basic statistical analysis and visualization (PCA, clustering, heatmaps, boxplots, volcano plots).
  • Implement simple pipelines for differential gene/protein expression and functional interpretation.
  • Build reproducible scripts and notebooks that can be adapted to their own datasets and projects.
Module 4

Day 1 –Workshop Orientation & Bioinformatics Overview

  • Genomics vs transcriptomics vs proteomics
  • FASTA, FASTQ, BAM, VCF, GTF/GFF
  • Count matrices (RNA-seq), basic proteomics tables, Importing data (CSV/TSV, text files)
  • Basic wrangling: filtering, subsetting, joins/merges, Histograms, boxplots, scatterplots
  • Hands On:Load a small gene expression/count matrix, Inspect structure, summary statistics, simple plot
Module 5

Day 2 – Genomics & Transcriptomics Data Analysis /RNA-seq / Transcriptomics

  • From raw reads to count matrix: basic QC (FastQC idea), alignment, quantification; check read quality & mapping rates.
  • Experimental design: controls vs treated, groups; biological vs technical replicates.
  • Normalization & DE: library size methods, TPM/FPKM idea, DESeq2/edgeR normalization and basic DE script outline.
  • Extracting significant genes: up/down-regulated lists.
  • Pathway enrichment: GO/KEGG concepts + hands-on by sending DE gene list to an online enrichment tool.
Module 6

Day 3 – Proteomics & Intro to Multi-Omics Integration

  • Types of proteomics experiments: label-free vs labeled (concept only).
  • Proteomics data tables: protein IDs, intensities, missing values; basic handling + log-transform & normalization.
  • Differential abundance: simple stats (t-test/ANOVA), volcano/box plots; mapping significant proteins to pathways/functions (with one example).
  • Integrative view: matching gene–protein IDs and outline of gene vs protein correlation plots in R/Python. 
Module 7

Who Should Enrol?

  • Undergraduate/postgraduate degree in Microbiology, Biotechnology, Bioinformatics, Computational Biology, Genomics, or related fields.
  • Professionals in healthcare, pharma, diagnostics, biotech, or omics-based research labs.
  • Data scientists and AI/ML engineers interested in applying coding and analytics to biological and omics datasets.
  • Individuals with a keen interest in the convergence of life sciences, coding, and data-driven biological research.
Module 8

Important Dates

Module 9

Registration Ends

02/07/2026
IST 7:00 PM

Module 10

Workshop Dates

02/07/2026 – 02/09/2026
IST 8:00 PM

Module 11

Workshop Outcomes

  • Gain practical experience using Python and R for omics data analysis.
  • Learn to handle real-world genomics, transcriptomics, and proteomics datasets.
  • Be able to run basic differential expression and exploratory analyses.
  • Produce publication-ready plots and summaries for omics data.
  • Develop reusable scripts/notebooks that can be adapted for future research projects.
Module 12

Meet Your Mentor(s)

DR. HARISHCHANDER ANANDARAM

Assistant Professor

Dr Harishchander Anandaram is an Assistant Professor at Centre for Excellence in Computational Engineering and Networking, Amrita Vishwa Vidyapeetham, Coimbatore, Tamil Nadu, India. He received his Ph.D. Degree in Bioengineering from Sathyabama Institute of Science and Technology, Chennai, in 2020. . . . In his PhD thesis, he worked on pharmacogenomics and miRNA- regulated networks in psoriasis, a joint project with Georgetown University, USA, JIPMER, INDIA, CIBA, INDIA, and ILS, INDIA. His thesis illustrated a multi-disciplinary approach by combining computational biophysics and molecular biology machine learning. Also, he had the opportunity to collaborate with international researchers and have publications in reputed international journals in bioinformatics and systems biology simultaneously. He has received the prestigious “Young Scientist Award” from “The Melinda Gates Foundation” for his research abstract on “The Implications of miRNA Dynamics in Infectious Diseases”. To date, he has reviewed more than 200 manuscripts in systems biology. He is currently working on predicting Novel lead molecules and biomarkers using computational techniques to target inflammatory pathways associated with infectious and autoimmune disorders.

Module 13

Fee Structure

Module 14

Student Fee

₹1399 | $55

Module 15

Ph.D. Scholar / Researcher Fee

₹1999 | $65

Module 16

Academician / Faculty Fee

₹2999 | $75

Module 17

Industry Professional Fee

₹3999 | $90

Module 18

What You’ll Gain

  • Live & recorded sessions
  • e-Certificate upon completion
  • Post-workshop query support
  • Hands-on learning experience
Module 19

Join Our Hall of Fame!

Take your research to the next level with NanoSchool.

Module 20

Publication Opportunity

Get published in a prestigious open-access journal.

Module 21

Centre of Excellence

Become part of an elite research community.

Module 22

Networking & Learning

Connect with global researchers and mentors.

Module 23

Global Recognition

Worth ₹20,000 / $1,000 in academic value.

Module 24

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Instructor

Lead Instructor

Dr. Sarah Chen

PhD in Computational Mechanics from MIT with 15+ years of experience in Industrial AI. Former Lead Data Scientist at Tesla and current advisor to Fortune 500 manufacturing firms.

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Python/R for Bioinformatics: Genomics, Transcriptomics & Proteomics Data

Professional Certification Program

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FormatLive + Recorded
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Duration8 Weeks
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CertificationVerified
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